The 1988 NAIA Division II football season, as part of the 1988 college football season in the United States and the 33rd season of college football sponsored by the NAIA, was the 19th season of play of the NAIA division II for football.
^ – NAIA Division II playoff participant Evangel finished the 1988 season with an 11–1 record and a 7–0 mark in HAAC play. In March 1989, the team forfeited all 11 wins and their conference title because it had used two ineligible players.